Cysteine-reactive ligand discovery in proteomes

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United States of America Patent

PATENT NO 10782295
APP PUB NO 20160252509A1
SERIAL NO

14911316

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Abstract

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Cells produce electrophilic products with the potential to modify and affect the function of proteins. Chemoproteomic methods have provided a means to qualitatively inventory proteins targeted by endogenous electrophiles; however, ascertaining the potency and specificity of these reactions to identify the most sensitive sites in the proteome to electrophilic modification requires more quantitative methods. Here, we describe a competitive activity-based profiling method for quantifying the reactivity of electrophilic compounds against 1000+ cysteines in parallel in the human proteome. Using this approach, we identify a select set of proteins that constitute hot spots for modification by various lipid-derived electrophiles, including the oxidative stress product 4-hydroxnonenal (HNE). We show that one of these proteins, ZAK kinase, is labeled by HNE on a conserved, active site-proximal cysteine, resulting in enzyme inhibition to create a negative feedback mechanism that can suppress the activation of JNK pathways by oxidative stress.

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Patent OwnerAddress
THE SCRIPPS RESEARCH INSTITUTE10550 N TORREY PINES RD TPC-8 LA JOLLA CA 92037

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Inventor(s)

Inventor Name Address # of filed Patents Total Citations
Backus, Keriann San Diego, US 2 4
Cravatt, Benjamin La Jolla, US 7 16
Wang, Chu Beijing, CN 19 41

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