Identification of microorganisms from genome sequencing data
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United States of America Patent
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Aug 25, 2020
Grant Date -
Nov 16, 2017
app pub date -
May 11, 2017
filing date -
May 11, 2016
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Abstract
A diagnostic analysis method and system is provided for identifying a microorganism from a genome sequence. Partially or fully assembled microbial genomes or short reads from whole-genome sequencing of microbial genomes are processed into a 4 MB Boolean array while preserving 1% of the genomic information in a way that allows for rapid comparison of a query genome to a large reference database. This represents a critical savings in storage space and speed by which large reference libraries can be queried.
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