Profile searching in nucleic acid sequences using the Fast Fourier Transformation
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United States of America Patent
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Nov 1, 2011
Grant Date -
Dec 8, 2005
app pub date -
Jan 11, 2005
filing date -
May 19, 1999
priority date (Note) -
Expired
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Abstract
The invention provides methods for detecting known blocks of functionally aligned protein sequences in a test nucleic acid sequence, e.g., in an uncharacterized EST. The method can detect the presence of known blocks of functionally aligned protein sequences in a test nucleic acid sequence based on the total number of base matches for the variety of possible lags.
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