Parallelization of surprisal data reduction and genome construction from genetic data for transmission, storage, and analysis
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United States of America Patent
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Jun 10, 2014
Grant Date -
Sep 26, 2013
app pub date -
Mar 23, 2012
filing date -
Mar 23, 2012
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Abstract
A method, computer product, and computer system of reducing an amount of data representing a genetic sequence of an organism, comprising: a computer dividing a reference genome and a sequence of the organism into parts and assigning the parts to one of a plurality of computer processing elements. Within each computer processing element, comparing nucleotides of the genetic sequence of the organism to nucleotides from a part of the reference genome, to find differences where nucleotides of the genetic sequence of the organism which are different from the nucleotides of the reference genome; and storing the surprisal data in a repository. Combining the parts of the surprisal data from the repository to form a complete set of surprisal data representing the differences between the genetic sequence of the organism and the reference genome; and storing the complete set of surprisal data in the repository.
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