The invention provides a fast approximate as well as exact hierarchical network storage and retrieval system and method for encoding and indexing graphs or networks into a data structure called the Cognitive Signature for property based, analog based or structure or sub-structure based search. The system and method produce a Cognitive Memory from a multiplicity of stored Cognitive Signatures and are ideally suited to store and index all or parts of massive data sets, linguistic graphs, protein graphs, chemical graphs, graphs of biochemical pathways, image or picture graphs as well as dynamical graphs such as traffic graphs or flows and motion picture sequences of graphs. The system and method have the advantage that properties of the Cognitive Signature of the graph can be used in correlations to the properties of the underlying data making the system ideal for semantic indexing of massive scale graph data sets.
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